data_test {BayMAP}R Documentation

A small PAR-CLIP data set as an example

Description

A small subsample on chromosome 1 of a publically available data set of Kishore et al. (2011).

Usage

data("data_test")

Format

A data frame with 1000 observations on the following 5 variables.

chr

a factor with the chromosomes as levels 1, ..., 22, X, Y

pos

a positive integer with the genomic position

mutation

a factor with substitution types as levels, e.g., TC

count

a positive integer with the number of observed substitutions

coverage

a positive integer with the number of observed reads for this position

Author(s)

Eva-Maria Huessler, eva-maria.huessler@uni-duesseldorf.de

References

Kishore et al. (2011), (SRA accession numbers: SRR189784)

Examples

## Not run: 
data(data_test)

## End(Not run)

[Package BayMAP version 2.0.1 Index]